Author/s
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Title
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Journal
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| Allendorf, F.W., England, P.R., Luikart, G., Ritchie, P.A. and Ryman, N. |
Genetic effects of harvest on wild animal populations. |
Trends in Ecology & Evolution 23:327-337. |
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| Ashton G.V., Stevens M.I., Hart M.C., Green D.H., Burrows M.T., Cook E.J. and Willis, K.J. |
Mitochondrial DNA reveals multiple northern hemisphere introductions of Caprella mutica (Crustacea, Amphipoda). |
Molecular Ecology 17: 1293-1303. |
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| Atkinson, Q. D., Gray, R.D. and Drummond, A.J. |
MtDNA variation predicts population size in humans and reveals a major southern Asian chapter in human prehistory. |
Molecular Biology and Evolution 25:468-474. |
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| Boessenkool, S., King, T.M., Seddon, P.J. and Waters, J.M. |
Isolation and characterization of microsatellite loci from the yellow-eyed penguin (Megadyptes antipodes). |
Molecular Ecology Resources 8:1043-1045. |
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| Bordewich, M., Rodrigo, A. and Semple, C. |
Selecting Taxa to Save or Sequence: Desirable Criteria and a Greedy Solution. |
Systematic Biology 57:825-834. |
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| Bordewich, M. and Semple, C. |
Nature reserve selection problem: A tight approximation algorithm. |
Ieee-Acm Transactions on Computational Biology and Bioinformatics 5:275-280. |
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| Bruen, T. C. and Bryant, D. |
A subdivision approach to maximum parsimony. |
Annals of Combinatorics 12:45-51. |
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| Bruen, T. C. and Bryant, D. |
Parsimony via consensus. |
Systematic Biology 57:251-256. |
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| Buckley, T. R., Attanayake,D., Park, D., Ravindran, S., Jewell, T.R. and Normark, B.B. |
Investigating hybridization in the parthenogenetic New Zealand stick insect Acanthoxyla (Phasmatodea) using single-copy nuclear loci. |
Molecular Phylogenetics and Evolution 48:335-349. |
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| Burridge, C. P., Craw, D., Jack, D.C., King, T.M. and Waters, J. |
Does fish ecology predict dispersal across a river drainage divide? |
Evolution 62:1484-1499. |
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| Burridge, C. P., Craw, D., Fletcher, D. and Waters, J.M. |
Geological dates and molecular rates: Fish DNA sheds light on time dependency. |
Molecular Biology and Evolution 25:624-633. |
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| Chapple, D. G., Daugherty, C.H. and Ritchie, P.A. |
Comparative phylogeography reveals pre-decline population structure of New Zealand Cyclodina (Reptilia: Scincidae) species. |
Biological Journal of the Linnean Society 95:388-408. |
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| Chapple, D. G., Patterson, G.B., Gleeson, D.M., Daugherty, C.H. and Ritchie, P.A. |
Taxonomic revision of the marbled skink (Cyclodina oliveri, Reptilia : Scincidae) species complex, with a description of a new species. |
New Zealand Journal of Zoology 35:129-146. |
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| Chapple, D. G., Patterson, G.B., Bell, T. and Daugherty, C.H. |
Taxonomic revision of the New Zealand Copper Skink (Cyclodina aenea : Squamata : Scincidae) species complex, with descriptions of two new species. |
Journal of Herpetology 42:437-452. |
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| Chapple, D. G., Hutchinson, M.N., Maryan, B., Plivelich, M., Moore, J.A. and Keogh, J.S. |
Evolution and maintenance of colour pattern polymorphism in Liopholis (Squamata : Scincidae). |
Australian Journal of Zoology 56:103-115. |
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| Chen, X. S., White,W.T., Collins, L. and Penny, D. |
Computational Identification of Four Spliceosomal snRNAs from the Deep-Branching Eukaryote Giardia intestinalis. |
Public Library of Science ONE 3:e3106. |
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| Collins, L. J. and Schoenfeld, B. |
Next Generation Sequencing in New Zealand. |
New Zealand BioScience 17:12-15. |
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| Collins, L. J., Biggs, P.J., Voelckel, C. and Joly, S. |
An approach to transcriptome analysis of non-model organisms using short-read sequences. |
Genome Informatics 21:3-14. |
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| Convey, P., J. Gibson, A.E., Hillenbrand, C.D., Hodgson, D.A., Pugh, P.J.A., Smellie, J.L. and Stevens, M.I. |
Antarctic terrestrial life - challenging the history of the frozen continent? |
Biological Reviews 83:103-117. |
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| Corin, S. E., Ritchie, P.A. and Lester, P.J. |
Introduction Pathway Analysis Into New Zealand Highlights a Source Population 'Hotspot' in the Native Range of the Red imported Fire Ant (Solenopsis invicta). |
Sociobiology 52:129-143. |
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| Craw, D., Burridge, C., Norris, R. and Waters, J. |
Genetic ages for Quaternary topographic evolution: a new dating tool. |
Geology 36:19-22. |
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| Craw, D., Burridge, C.P., Upton, P., Rowe, D.L. and Waters, J.M. |
Evolution of biological dispersal corridors through a tectonically active mountain range in New Zealand. |
Journal of Biogeography 35:1790-1802. |
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| Daugherty, C.H. and Cree, A. |
A survivor from the dinosaur age. |
In The Awa Book of New Zealand Science. R. Priestley, ed. Wellington, Awa Press 291-301 [ISBN 9780958262996] [Reprinted excerpt from popular article by Daugherty and Cree 1990 New Zealand Geographic No. 6: 66-86]. |
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| Faller, B., Pardi, F. and Steel, M. |
Distribution of phylogenetic diversity under random extinction. |
Journal of Theoretical Biology 251:286-296. |
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| Fischer, M. and Steel, M. |
Expected anomolies in the fossil record. |
Evolutionary bioinformatics online 4: 61-67. |
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| Gernhard, T. |
New analytic results for speciation times in neutral models. |
Bulletin of Mathematical Biology 70:1082-1097. |
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| Gernhard, T. |
The conditioned reconstructed process. |
Journal of Theoretical Biology 253:769-778. |
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| Gernhard, T., Hartmann, K. and Steel, M. |
Stochastic properties of generalised Yule models, with biodiversity applications. |
Journal of Mathematical Biology 57:713-735. |
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| Gill, J., Linusson, S., Moulton, V. and Steel, M. |
A regular decomposition of the edge-product space of phylogenetic trees. |
Advances in Applied Mathematics. 158-176. |
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| Gluckman, P. D., Hanson, M.A., Beedle, A.S. and Spencer, H.G. |
Predictive adaptive responses in perspective. |
Trends in Endocrinology and Metabolism 19:109-110. |
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| Godfrey, S. S., Bull, C.M. and Nelson, N.J. |
Seasonal and spatial dynamics of ectoparasite infestation of a threatened reptile, the tuatara (Sphenodon punctatus). |
Medical and Veterinary Entomology 22:374-385. |
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| Goldberg, J., Trewick, S.A. and Paterson, A.M. |
Evolution of New Zealand's terrestrial fauna: a review of molecular evidence. |
Philosophical Transactions of the Royal Society B-Biological Sciences 363:3319-3334. |
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| Greaves, S. N. J., Chapple, D.G., Daugherty, C.H., Gleeson, D.M. and Ritchie, P.A. |
Genetic divergences pre-date Pleistocene glacial cycles in the New Zealand speckled skink, Oligosoma infrapunctatum. |
Journal of Biogeography 35:853-864. |
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| Greenslade, P., Melbourne, B., Davies, K. and Stevens, M.I. |
The status of two exotic terrestrial Crustacea on subantarctic Macquarie Island. |
Polar Record 44:15-23. |
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| Grueber, C. E., King, T.M., Waters, M. and Jamieson, I.J. |
Isolation and characterization of microsatellite loci from the endangered New Zealand takahe (Gruiformes; Rallidae; Porphyrio hochstetteri). |
Molecular Ecology Resources 8:884-886. |
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| Gruenheit, N., Lockhart, P.J., Steel, M. and Martin, W. |
Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites. |
Molecular Biology and Evolution 25:1512-1520. |
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| Grunewald, S., Huber, K.T., Moulton, V. and Semple,C. |
Encoding phylogenetic trees in terms of weighted quartets. |
Journal of Mathematical Biology 56:465-477. |
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| Grunewald, S., Humphries, P.J. and Semple, C. |
Quartet compatibility and the quartet graph. |
Electronic Journal of Combinatorics 15. |
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| Hare, K.M., Pledger, S. and Daugherty, C.H. |
Low incubation temperatures negatively influence locomotor performance and behaviour of the nocturnal lizard Oligosoma suteri (Lacertidae: Scincidae). |
Copeia 2008(1): 16-22. |
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| Hare, K.M., Daugherty, C.H. and Chapple, D.G. |
Comparative phylogeography of three skink species (Oligosoma moco, O. smithi, O suteri; Reptilia: Scincidae) in northeastern New Zealand. |
Molecular Phylogenetics and Evolution 46: 303-315. |
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| Hartnup, K., Huynen, L., Te Kanawa, R., Shepherd, L.D., Millar, C.D. and Lambert, D. |
A molecular study of a unique Maori cloak. in M. Haslam, ed. Archaeological Science Under A Microscope: Studies in Honour of Thomas H. Loy. |
Australian National University Press, Canberra, Australia. |
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| Hay, J. M. and Lambert, D.M. |
Microsatellite DNA loci identify individuals and provide no evidence for multiple paternity in wild tuatara (Sphenodon : Reptilia). |
Conservation Genetics 9:1039-1043. |
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| Hay, J. M., Subramanian, S., Millar,C.D., Mohandesan, E. and Lambert, D. |
Rapid Molecular Evolution in a Living Fossil. |
Trends in Genetics 24:106-109. |
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| Hayward, J. J. and Rodrigo, A.G. |
Recombination in feline immunodeficiency virus from feral and companion domestic cats. |
Virology Journal 5. |
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| Hendy, M. D. and Snir, S. |
Hadamard conjugation for the Kimura 3ST model: Combinatorial proof using path sets. |
Ieee-Acm Transactions on Computational Biology and Bioinformatics 5:461-471. |
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| Holland, B. R., Clarke, A.C. and Meudt, H.M. |
Optimizing automated AFLP scoring parameters to improve phylogenetic resolution. |
Systematic Biology 57:347-366. |
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| Holland, B. R., Benthin, S., Lockhart, P.J., Moulton, V. and Huber, K.T. |
Using supernetworks to distinguish hybridization from lineage-sorting. |
Bmc Evolutionary Biology 8. |
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| Hon, C. C., Lam, T.Y., Shi, Z.L., Drummond, A.J., Yip, C.W., Zeng,F., Lam, P.Y. and Leung, F.C.C. |
Evidence of the recombinant origin of a bat severe acute respiratory syndrome (SARS)-like coronavirus and its implications on the direct ancestor of SARS coronavirus. |
Journal of Virology 82:1819-1826. |
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| Horrocks, A., Grant-Mackie, J. and Matisoo-Smith, E. |
Introduced taro (Colocasia esculenta) and yams (Dioscorea spp.) in Podtanean (2700-1800 years BP) deposits from Mé Auré Cave (WMD007), Moindou, New Caledonia. |
Journal of Archaeological Science 35:169-180. |
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| Howe, C. J., Barbrook, A.C., Nisbet, R.E.R., Lockhart, P.J. and Larkum, A.W.D. |
The origin of plastids. |
Philosophical Transactions of the Royal Society B-Biological Sciences 363:2675-2685. |
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| Irimia, M., Rukov, J.L., Penny, D., Garcia-Fernandez, J., Vinther, J. and Roy, S.W. |
Widespread Evolutionary Conservation of Alternatively Spliced Exons in Caenorhabditis. |
Molecular Biology and Evolution 25:375-382. |
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| Irimia, M., Rukov, J.L., Penny, D., Vinther, J., Garcia-Fernandez, J. and Roy, S.W. |
Origin of introns by "intronization' of exonic sequences. |
Trends in Genetics 24:378-381. |
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| Jamieson, I. G., Grueber, C.E., Waters,J.M. and Gleeson, D.M. |
Managing genetic diversity in threatened populations: a New Zealand perspective. |
New Zealand Journal of Ecology 32:130-137. |
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| Kneip, C., Voss, C., Lockhart, P.J. and Maier, U.G. |
The cyanobacterial endosymbiont of the unicellular algae Rhopalodia gibba shows reductive genome evolution. |
Bmc Evolutionary Biology 8. |
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| Landis, C. A., Campbell, H.J., Begg, J.G., Mildenhall, D.C., Paterson, A.M. and Trewick, S.A. |
The Waipounamu Erosion Surface: Questioning the Antiquity of the New Zealand Land Surface and Terrestrial Fauna and Flora. |
Geological Magazine 145:173-197. |
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| Lawrence, H. A., Millar, C.D., Taylor, G.A., Macdonald, L.D. and Lambert, D.M. |
Excess of unpaired males in one of the World's most endangered seabirds, the Chatham Island taiko Pterodroma magentae. |
Journal of Avian Biology 39:359-363. |
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| Lawrence, H. A., Taylor, G.A., Millar, C.D. and Lambert, D.M. |
High mitochondrial and nuclear genetic diversity in one of the world's most endangered seabirds, the Chatham Island Taiko (Pterodroma magentae). |
Conservation Genetics 9:1293-1301. |
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| Lawrence, H. A., Taylor, G.A., Crockett, D.E., Millar, C.D. and Lambert, D.M. |
New Genetic Approach to Detecting Individuals of Rare and Endangered Species. |
Conservation Biology 22:1267-1276. |
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| Lawrence, H. A., Scofield, R.P., Crockett, D.E., Millar, C.D., and Lambert, D.M. |
Ancient genetic variation in one of the world's rarest seabirds. |
Heredity 101:543-547. |
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| Lemey, P., Pond, S.L.K., Drummond, A.J., Pybus, O.G., Shapiro, B., Barroso, H., Taveira, N. and Rambaut, A. |
Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics. |
Infection Genetics and Evolution 8:S15-S16. |
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| Leschen, R. A. B., Buckley, T.R., Harman, H.M. and Shulmeister, J. |
Determining the origin and age of the Westland beech (Nothofagus) gap, New Zealand, using fungus beetle genetics. |
Molecular Ecology 17:1256-1276. |
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| Li, G., Steel, M. and Zhang, L. |
More taxa are not necessarily better for the reconstruction of ancestral character states. |
Systematic Biology 57(4):647--653. |
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| Liggins, L., Chapple, D.G., Daugherty, C.H. and Ritchie, P.A. |
Origin and post-colonization evolution of the Chatham Islands skink (Oligosoma nigriplantare nigriplantare). |
Molecular Ecology 17: 3290-3305. |
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| Liggins, L., Chapple, D.G., Daugherty, C.H. and Ritchie, P.A. |
A SINE of restricted gene flow across the Alpine Fault: phylogeography of the New Zealand common skink (Oligosoma nigriplantare polychroma). |
Molecular Ecology 17:3668-3683. |
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| Matisoo-Smith, E., Roberts, K., Welikala, N., Tannock, G., Chester, P., Feek, D. and Flenley, J. |
Recovery of DNA and pollen from New Zealand lake sediments. |
Quartnary International 184:139-149. |
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| Matsen, F. A., Mossel, E. and Steel, M. |
Mixed-up trees: The structure of phylogenetic mixtures. |
Bulletin of Mathematical Biology 70:1115-1139. |
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| McCallum, J., Thomson, S., Pither-Joyce,M., Kenel, F., Clarke, A.C. and Havey, M.J. |
Genetic diversity analysis and single-nucleotide polymorphism marker development in cultivated bulb onion based on expressed sequence tag-simple sequence repeat markers. |
Journal of the American Society for Horticultural Science 133:810-818. |
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| McGaughran, A., Hogg, .ID. and Stevens, M.I. |
Patterns of population genetic structure for springtails and mites in southern Victoria Land, Antarctica. |
Molecular Phylogenetics and Evolution 46: 606-618. |
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| Michel, C., Hicks B.J., Stölting, K.N., Clarke, A.C., Stevens, M..I, Tana, R., Meyer, A. and van den Heuvel, M.R. |
Distinct migratory and landlocked ecotypes in a New Zealand eleotrid (Gobiomorphus cotidianus) – implications for incipient speciation and the origin of island freshwater fish species. |
BMC Evolutionary Biology 8:49. |
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| Millar, C. D., Dodd, A., Anderson, J., Gibb, G.C., Ritchie, P.A., Baroni, C., Woodhams, M.D., Hendy, M.D. and Lambert, D.M. |
Mutation and Evolutionary Rates in Adelie Penguins from the Antarctic. |
Plos Genetics 4: 1-9. |
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| Millar, C. D., Huynen, L.J., Subramanian,S., Mohandesan, E. and Lambert, D. |
New developments in ancient genomics. |
Trends in Ecology & Evolution 23:386-393. |
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| Miller, H. C., Miller, K.A. and Daugherty, C.H. |
Reduced MHC variation in a threatened tuatara species. |
Animal Conservation 11:206-214. |
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| Miller, H.C., Moore, J.A., Allendorf, F.A. and Daugherty, C.H. |
The evolutionary rate of tuatara revisited. |
Trends in Genetics 25(1): 13-15. |
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| Mitchell, N.J., Kearney, M.R., Nelson, N.J. and Porter, W.P. |
Predicting the fate of a living fossil: how will global warming affect sex determination and hatching phenology in tuatara? |
Proceedings of the Royal Society B 275(1648): 2185-2193. |
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| Mohandesan, E., Mowla, S.J., H.N.A. and Hofreiter, M. |
Ancient DNA from Human and Animal Remains from North-West Iran. |
Journal of Sciences, Islamic Republic of Iran 19:3-8. |
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| Moore, J.A., Miller, H.C., Daugherty, C.H. and Nelson, N.J. |
Fine-scale genetic structure of a long-lived reptile reflects recent habitat modification. |
Molecular Ecology 17:4630-4641. |
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| Moore, J. A., Nelson, N.J., Keall, S.N., and Daugherty, C.H. |
Implications of social dominance and multiple paternity for the genetic diversity of a captive-bred reptile population (tuatara). |
Conservation Genetics 9(5):1243-1251. |
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| Moore, J.A., Bell, B.D. and Linklater, W.L. |
The debate on behavior in conservation: New Zealand integrates theory with practice. |
Bioscience 58 (5): 454-459. |
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| Morgan-Richards, M., Trewick, S.A., Bartosch-Haerlid, A., Kardailsky, O., Phillips, M.J., McLenachan, P.A. and Penny, D. |
Bird evolution: testing the Metaves clade with six new mitochondrial genomes. |
Bmc Evolutionary Biology 8. |
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| Morgan-Richards, M., Trewick, S.A. and Dunavan, S. |
When is it coevolution? The case of ground weta and fleshy fruits in New Zealand. |
New Zealand Journal of Ecology 32:108-112. New Zealand Journal of Ecology 32:108-112. |
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| Neall, V.E. and Trewick, S.A. |
The age and origin of the Pacific islands: a geological overview. |
Philosophical Transactions of the Royal Society B-Biological Sciences 363:3293-3308. |
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| Nelson, N.J., Keall, S.N., Gaze, P. and Daugherty, C.H. |
Re-introduction of tuatara (Reptilia) as part of an ecological restoration project on Wakatere-papanui Island, Marlborough Sounds, New Zealand. |
Chapter in “Reintroduction Specialist Group Book”, IUCN. |
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| O’Neill, S.B., Chapple, D.G., Daugherty, C.H. and Ritchie, P.A. |
Phylogeography of two New Zealand lizards: McCann’s skink (Oligosoma maccanni) and the brown skink (O. zelandicum). |
Molecular Phylogenetics and Evolution 48: 1168-1177. |
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| Oxley, J., Semple, C. and Whittle, G. |
Wild triangles in 3-connected matroids. |
Journal of Combinatorial Theory Series B 98:291-323. |
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| Oxley, J., Semple, C. and Whittle, G. |
A chain theorem for matroids. |
Journal of Combinatorial Theory, Series B, 98, 447-483. |
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| Oxley, J., Semple, C., and Whittle, G. |
Maintaining 3-connectivity relative to a fixed basis. |
Advances in Applied Mathematics, 41, 1-9. |
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| Paul, D.B. and Spencer, H.G. |
It’s Ok, We’re Not Cousins by Blood: The Cousin Marriage Controversy in Historical Perspective. |
PLoS 6: 2627-2630. |
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| Penny, D. |
Molecular Evolution: Introduction. |
Encyclopedia of Life Sciences. John Wiley & Sons, Ltd, Chichester. |
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| Penny, D., White, W.T., Hendy, M.D., and Phillips, M.J. |
A Bias in ML Estimates of Branch Lengths in the Presence of Multiple Signals. |
Molecular Biology and Evolution 25:239-242. |
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| Phillips, M. J. and Pratt, R.C. |
Family-level relationships among the Australasian marsupial "herbivores" (Diprotodontia : Koala, wombats, kangaroos and possums). |
Molecular Phylogenetics and Evolution 46:594-605. |
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| Poss, M., and Ross, H. |
Evolution of the long terminal repeat and accessory genes of feline immunodeficiency virus genomes from naturally infected cougars. |
Virology 370:55-62. |
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| Poss, M., Ross, H., Rodrigo, A., Terwee, J., VandeWoude, S. and Biek, R. |
The molecular biology and evolution of feline immunodeficiency viruses of cougars. |
Veterinary Immunology and Immunopathology 123:154-158. |
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| Pratt, R. C., Morgan-Richards, M., and Trewick, S.A. |
Diversification of New Zealand weta (Orthoptera : Ensifera : Anostostomatidae) and their relationships in Australasia. |
Philosophical Transactions of the Royal Society B-Biological Sciences 363:3427-3437. |
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| Refsnider, J.M., Moore, J.A. and Streby, H. |
Sphenodon punctatus (Common tuatara): Prey detection. |
Herpetological Review 39(3): 347-348. |
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| Robins, J. H., McLenachan, P.A., Phillips,M.J., Craig, L., Ross, H.A., and Matisoo-Smith, E. |
Dating of divergences within the Rattus genus phylogeny using whole mitochondrial genomes. |
Molecular Phylogenetics and Evolution 49:460-466. |
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| Rodrigo, A., Bertels, F., Heled, J., Noder, R., Shearman, H. and Tsai, P. |
The perils of plenty: what are we going to do with all these genes? |
Philosophical Transactions of the Royal Society B-Biological Sciences 363:3893-3902. |
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| Ross, H.A., Murugan, S. and Li, W.L.S. |
Testing the reliability of genetic methods of species identification via simulation. |
Systematic Biology 57:216-230. |
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| Semple, C. and Welsh, D. |
Negative correlation in graphs and matroids. |
Combinatorics, Probability and Computing, 17, 423-435. |
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| Shavit Grievink, L., Penny, D., Hendy, M.D., and Holland, B.R. |
LineageSpecificSeqgen: generating sequence data with lineage-specific variation in the proportion of variable sites. |
BMC Evolutionary Biology 8:317. |
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| Shepherd, L. D., and Lambert, D.M. |
Ancient DNA and conservation: lessons from the endangered kiwi of New Zealand. |
Molecular Ecology 17:2174-2184. |
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| Shepherd, L. D., Holland, B.R. and Perrie, L.R. |
Conflict amongst chloroplast DNA sequences obscures the phylogeny of a group of Asplenium ferns. |
Molecular Phylogenetics and Evolution 48:176-187. |
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| Shepherd, L. D., Zuccarello, G.C., and Perrie, L.R. |
Microsatellite markers for Pseudopanax trees and their cross-species amplification in the Araliaceae. |
Conservation Genetics 9:1687-1689. |
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| Shepherd, L.D., Perrie, L.R. and Brownsey, P.J. |
Low-copy nuclear DNA sequences reveal a predominance of allopolyploids in a New Zealand Asplenium fern complex. |
Molecular Phylogenetics and Evolution 49:240-248. |
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| Smith, A.M., Taylor, P.D. and Spencer, H.G. |
Resolution of taxonomic issues in the Horneridae (Bryozoa: Cyclostomata). |
Annals of Bryozoology 2: 359-411. |
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| Star, B., Trotter, M.V. and Spencer, H.G. |
Evolution of fitnesses in structured populations with correlated environments. |
Genetics 179:1469-1478. |
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| Steel, M. and Rodrigo, A. |
Maximum likelihood supertrees. |
Systematic Biology 57:243-250. |
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| Stoffels, R. J. and Spencer, H.G. |
An asymmetric model of heterozygote advantage at major histocompatibility complex genes: Degenerate pathogen recognition and intersection advantage. |
Genetics 178:1473-1489. |
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| Storey, A. A., Quiroz, D., Ramirez, J.M., Beavan-Athfield, N., Addison, D.J., Walter, R., Hunt, T., Athens, J.S., Huynen, L. and Matisoo-Smith, E.A. |
Pre-Colombian chickens, dates, isotopes, and mtDNA. |
Proceedings of the National Academy of Sciences of the United States of America 105:E99-E99. |
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| Storey, A. A., Ladefoged, T. and Matisoo-Smith, E.A. |
Counting your chickens: Density and distribution of chicken remains in archaeological sites of Oceania. |
International Journal of Osteoarchaeology 18:240-261. |
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| Subramanian, S., Hay, J.M., Mohandesan, E., Millar, C.D. and Lambert, D.M. |
Molecular and morphological evolution in tuatara are decoupled. |
Trends in Genetics 25:16-18. |
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| Terezow, M. G., Nelson, N.J., and Markwell, T.J. |
Circadian emergence and movement of captive juvenile tuatara (Sphenodon spp.). |
New Zealand Journal of Zoology 35:205-216. |
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| Thatte, B. D., and Steel, M. |
Reconstructing pedigrees: A stochastic perspective. |
Journal of Theoretical Biology 251:440-449. |
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| Thierer, T., Bryant, D., and Steel, M. |
Counting ancestral reconstructions in a fixed phylogeny. |
Annals of Combinatorics 12:123-132. |
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| Trewick, S. A. |
DNA Barcoding is not enough: mismatch of taxonomy and genealogy in New Zealand grasshoppers (Orthoptera : Acrididae). |
Cladistics 24:240-254. |
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| Trewick, S. A., and Cowie, R.H. |
Introduction. Evolution on Pacific islands: Darwin's legacy. |
Philosophical Transactions of the Royal Society B-Biological Sciences 363:3289-3291. |
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| Trewick, S. A., Walker, K.J., and Jordan, C.J. |
Taxonomic and conservation status of a newly discovered giant landsnail from Mount Augustus, New Zealand. |
Conservation Genetics 9:1563-1575. |
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| Trewick, S. A., Morgan-Richards, M., and Collins, L.J. |
Are you my mother? Phylogenetic analysis reveals orphan hybrid stick insect genus is part of a monophyletic New Zealand clade. |
Molecular Phylogenetics and Evolution 48:799-808. |
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| Trewick, S., and Morris, S. |
Diversity and taxonomic status of some New Zealand grasshoppers. |
DOC Research & Development Series #290. Wellington, New Zealand. |
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| Trotter, M. V., and Spencer, H.G. |
The Generation and Maintenance of Genetic Variation by Frequency-Dependent Selection: Constructing Polymorphisms Under the Pairwise Interaction Model. |
Genetics 180:1547-1557. |
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| Voelckel, C., Heenan, P.B., Janssen, B., Reichelt, M., Ford, K., Hofmann, R., and Lockhart, P.J. |
Transcriptional and biochemical signatures of divergence in natural populations of two species of New Zealand alpine Pachycladon. |
Molecular Ecology 17:4740-4753. |
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| Walker, K.J., Trewick, S.A., and Barker, G.M. |
A new species of Powelliphanta (Mollusca: Pulmonata: Rhytididae) land snail from the Stockton Plateau, New Zealand. |
Journal of the Royal Society of New Zealand 38: 163–186. |
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| Wang, Y. L., Joly, S., and Morse, D. |
Phylogeny of dinoflagellate plastid genes recently transferred to the nucleus supports a common ancestry with red algal plastid genes. |
Journal of Molecular Evolution 66:175-184. |
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| Waters, J. M. |
Driven by the West Wind Drift? A synthesis of southern temperate marine biogeography, with new directions for dispersalism. |
Journal of Biogeography 35:417-427. |
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| Waters, J. M. |
Marine biogeographical disjunction in temperate Australia: historical landbridge, contemporary currents, or both? |
Diversity and Distributions 14:692-700. |
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| Waters, J. M., and Craw, D. |
Evolution and biogeography of New Zealand's longjaw galaxiids (Osmeriformes : Galaxiidae): the genetic effects of glaciation and mountain building. |
Freshwater Biology 53:521-534. |
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| Waugh, J., Huynen, L., Millar, .CD., and Lambert, D.M. |
DNA barcoding in animal species. |
BioEssays 30:92-93. |
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| Wharam, S.D., Wardill, T.J., Goddard, V., Donald, K.M., Parry, H., Pascoa, P., Pickerill, P., Smerdon, G., and Hawkins, A.J.S. |
A leucine aminopeptidae gene of the Pacific oyster Crassostrea gigas exhibits an unusually high level of sequence variation, predicted to affect structure, and hence activity, of the enzyme. |
Journal of Shellfish Research. 27 (5): 1143-1154. |
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| Whigham, P. A., Dick,G.C., and Spencer, H.G. |
Genetic drift on networks: Ploidy and the time to fixation. |
Theoretical Population Biology 74:283-290. |
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| White, D. J., Wolff, J.N., Pierson, M., and Gemmell, N.J. |
Revealing the hidden complexities of mtDNA inheritance. |
Molecular Ecology 17:4925-4942. |
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| White, W. T. J., and Hendy, M.D. |
Compressing DNA sequence databases with coil. |
Bmc Bioinformatics 9. |
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| Whitfield, J. B., Cameron, S.A., Huson, D.H., and Steel, M.A. |
Filtered Z-Closure Supernetworks for Extracting and Visualizing Recurrent Signal from Incongruent Gene Trees. |
Systematic Biology 57:939-947. |
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| Woo, K.L., Hunt, M., Harper, D., Nelson, N.J., Daugherty, C.H., and Bell, B.D. |
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Naturwissenschaten DOI 10.1007/s00114-008-0491-8. |
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| Huson, D, Moulton, V., Steel, M., and Freiberger, M. |
Reconstructing the tree of life. |
PLUS magazine. |
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| Zhang, X.-X. and Rainey, P. B. |
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| Zhang, X.-X. and Rainey, P. B. |
The regulation of copper homeostasis in Pseudomonas fluorescens SBW25. |
Environmental Microbiology, 10, 3284-3294. |
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| Moon, C. D., Zhang, X.-X., Matthijs, S. Schäfer, M, Budzikiewicz, H. and Rainey, P. B. |
Pyoverdine-mediated iron acquisition in the plant growth-promoting bacterium, Pseudomonas fluorescens SBW25. |
BMC Microbiology 8, 7. |
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| Zhang X.-X. and Rainey, P. B. |
Dual involvement of CbrAB and NtrBC in the regulation of histidine utilization in Pseudomonas fluorescens SBW25. |
Genetics 178, 185-195. |
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| Zhang X.-X., Scott, K. Meffin, R. and Rainey, P. B. |
Genetic characterization of psp encoding the DING protein in Pseudomonas fluorescens SBW25. |
BMC Microbiology 7, 114. |
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